Create igraph-compatible graph and save in Seurat object

Source: R/functions.R

Create igraph-compatible graph and save in Seurat object

PrepareGraph(object, reduction, dims, knn)

Arguments

object

Seurat object
reduction

Reduced dimension slot to pull from
dims

Dimensions to use
knn

Number of k-nearest neighbors to use

Value

Seurat object with igraph graph stored in object@misc$westerlund_graph