Fit model

Source: R/ambient.R

Fit model

FitAmbientModel(
  data,
  idents,
  batches,
  anno = NULL,
  coefs.use = NULL,
  fit.n = 50,
  fit.cutoff = 2
)

Arguments

data

TP10K matrix genes by cells
idents

identities to fit
batches

batches
coefs.use

model coefficients to use
fit.n

number of genes to fit
fit.cutoff

residual cutoff

Value

list describing model outputs