AddModuleScore from Seurat using scaled expression values

Source: R/seurat_wrappers.R

See ?Seurat::AddModuleScore

AddModuleScoreScaled(
  object,
  features,
  pool = NULL,
  nbin = 20,
  ctrl = 100,
  k = FALSE,
  assay = NULL,
  name = "Cluster",
  seed = 1,
  search = FALSE,
  ...
)

Arguments

object

Seurat object
features

Genes to use
pool

Genes to pull from for controls
nbin

Number of bins
ctrl

Number of control genes
k

Feature clusters
assay

Assay to use
name

Prefix for metadata columns
seed

Seed
search

Search for gene names
...

Value

Seurat object